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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004163
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAGACTTTCTAGCATTGCCC
miRNA*
CATATGCTAGAAAGTCTTATA
mismatches:
5
bulges:
0
View larger
pre-miRNA
TTGACTTCTACTAGTTACTTCCTCTGTTTCAGGTTA
TAAGACTTTCTAGCATTGCCC
ACATT
CATATGCTAGAAAGTCTTATA
ACCTGAAATGGTGGTAG
TATATAATAAAATAAT
dot-bracket secondary structure
........((.((..((((.((.(((((((((((((
((((((((((((((((.....
.....
...))))))))))))))))))
))))))))))).)).))
))..)).)).......
SIMILARITIES
miRBase
osa-MIR819d
:
7e-21
PMRD
osa-miR819d
:
7e-21
microPC
miR819
:
1e-28
UniProt
no hits
RFAM
MIR1122: 1e-16
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record